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Articles (89)
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Causal deconvolution by algorithmic generative models

Zenil, Hector, Kiani, Narsis A., Zea, Allan A., Tegnér, Jesper

Journal:

Nature Machine Intelligence

Année:

2019

Langue:

english

Fichier:

PDF, 2.33 MB

english, 2019

Evaluating Network Inference Methods in Terms of Their Ability to Preserve the Topology and Complexity of Genetic Networks

Kiani, Narsis A., Zenil, Hector, Olczak, Jakub, Tegnér, Jesper

Journal:

Seminars in Cell & Developmental Biology

Année:

2016

Langue:

english

Fichier:

PDF, 1.58 MB

english, 2016

Neuronal firing rates account for distractor effects on mnemonic accuracy in a visuo-spatial working memory task

Julian Macoveanu, Torkel Klingberg, Jesper Tegnér

Journal:

Biological Cybernetics

Année:

2007

Langue:

english

Fichier:

PDF, 600 KB

english, 2007

Quantifying loss of information in network-based dimensionality reduction techniques

Zenil, Hector, Kiani, Narsis A., Tegnér, Jesper

Journal:

Journal of Complex Networks

Année:

2015

Langue:

english

Fichier:

PDF, 1.55 MB

english, 2015

A perspective on bridging scales and design of models using low-dimensional manifolds and data-driven model inference

Tegnér, Jesper, Zenil, Hector, Kiani, Narsis A., Ball, Gordon, Gomez-Cabrero, David

Journal:

Philosophical Transactions Mathematical Physical & Engineering Sciences

Année:

2016

Langue:

english

Fichier:

PDF, 435 KB

english, 2016

Bioinformatics Mining and Modeling Methods for the Identification of Disease Mechanisms in Neurodegenerative Disorders

Hofmann-Apitius, Martin, Ball, Gordon, Gebel, Stephan, Bagewadi, Shweta, de Bono, Bernard, Schneider, Reinhard, Page, Matt, Kodamullil, Alpha, Younesi, Erfan, Ebeling, Christian, Tegnér, Jesper, Canar

Journal:

International Journal of Molecular Sciences

Année:

2015

Langue:

english

Fichier:

PDF, 5.02 MB

english, 2015

A Review of Graph and Network Complexity from an Algorithmic Information Perspective

Zenil, Hector, Kiani, Narsis, Tegnér, Jesper

Journal:

Entropy

Année:

2018

Langue:

english

Fichier:

PDF, 457 KB

english, 2018

An Algorithmic Information Calculus for Causal Discovery and Reprogramming Systems

Zenil, Hector, Kiani, Narsis A., Marabita, Francesco, Deng, Yue, Elias, Szabolcs, Schmidt, Angelika, Ball, Gordon, Tegnér, Jesper

Journal:

iScience

Année:

2019

Langue:

english

Fichier:

PDF, 7.00 MB

english, 2019

[IEEE 2020 IEEE Congress on Evolutionary Computation (CEC) - Glasgow, United Kingdom (2020.7.19-2020.7.24)] 2020 IEEE Congress on Evolutionary Computation (CEC) - Evolving Neural Networks through a Reverse Encoding Tree

Zhang, Haoling, Yang, Chao-Han Huck, Zenil, Hector, Kiani, Narsis A., Shen, Yue, Tegner, Jesper N.

Année:

2020

Fichier:

PDF, 2.99 MB

2020

Towards scalable and data efficient learning of Markov boundaries

Jose M. Peña, Roland Nilsson, Johan Björkegren, Jesper Tegnér

Journal:

International Journal of Approximate Reasoning

Année:

2007

Langue:

english

Fichier:

PDF, 339 KB

english, 2007

Learning dynamic Bayesian network models via cross-validation

Jose M. Peña, Johan Björkegren, Jesper Tegnér

Journal:

Pattern Recognition Letters

Année:

2005

Langue:

english

Fichier:

PDF, 410 KB

english, 2005

Epigenetic alterations in autoimmune disease

Esteban Ballestar, Biola M Javierre, Lorenzo de la Rica, David Gómez-Cabrero, Jesper Tegnér, Carmen Gomez-Vaquero, Javier Narvaez, Henar Hernando, Virginia C Rodriguez, Roser Vento, Laura Ciudad, Javi

Journal:

Journal of Translational Medicine

Année:

2011

Langue:

english

Fichier:

PDF, 88 KB

english, 2011

Decoding complex biological networks - tracing essential and modulatory parameters in complex and simplified models of the cell cycle

Olivia Eriksson, Tom Andersson, Yishao Zhou, Jesper Tegnér

Journal:

BMC Systems Biology

Année:

2011

Langue:

english

Fichier:

PDF, 506 KB

english, 2011

Can modular analysis identify disease-associated candidate genes for therapeutics?

Jesper Tegnér

Journal:

Journal of Biology

Année:

2009

Langue:

english

Fichier:

PDF, 101 KB

english, 2009

The dynamical stability of reverberatory neural circuits

Jesper Tegnér, Albert Compte, Xiao-Jing Wang

Journal:

Biological Cybernetics

Année:

2002

Langue:

english

Fichier:

PDF, 266 KB

english, 2002

Spike-timing-dependent plasticity: common themes and divergent vistas

Adam Kepecs, Mark C.W. van Rossum, Sen Song, Jesper Tegner

Journal:

Biological Cybernetics

Année:

2002

Langue:

english

Fichier:

PDF, 248 KB

english, 2002

Reverse Engineering of Gene Networks with LASSO and Nonlinear Basis Functions

Mika Gustafsson, Michael Hörnquist, Jesper Lundström, Johan Björkegren, Jesper Tegnér

Journal:

Annals of the New York Academy of Sciences

Année:

2009

Langue:

english

Fichier:

PDF, 428 KB

english, 2009

Modulation of Burst Frequency by Calcium-Dependent Potassium Channels in the Lamprey Locomotor System: Dependence of the Activity Level

Jesper Tegnér, Anders Lansner, Sten Grillner

Journal:

Journal of Computational Neuroscience

Année:

1998

Langue:

english

Fichier:

PDF, 2.85 MB

english, 1998

Systems biology of innate immunity

Jesper Tegnér, Roland Nilsson, Vladimir B. Bajic, Johan Björkegren, Timothy Ravasi

Journal:

Cellular Immunology

Année:

2006

Langue:

english

Fichier:

PDF, 545 KB

english, 2006

Perturbations to uncover gene networks

Jesper Tegnér, Johan Björkegren

Journal:

Trends in Genetics

Année:

2007

Langue:

english

Fichier:

PDF, 643 KB

english, 2007

GABAB-ergic modulation of burst rate and intersegmental coordination in lamprey: experiments and simulations

Jesper Tegnér, Sten Grillner

Journal:

Brain Research

Année:

2000

Langue:

english

Fichier:

PDF, 239 KB

english, 2000

An adaptive spike-timing-dependent plasticity rule

Jesper Tegnér, Ádám Kepecs

Journal:

Neurocomputing

Année:

2002

Langue:

english

Fichier:

PDF, 197 KB

english, 2002

The synaptic NMDA component desynchronizes neural bursters

Jesper Tegnér, Jeanette Hellgren-Kotaleski

Journal:

Neurocomputing

Année:

1999

Langue:

english

Fichier:

PDF, 255 KB

english, 1999

Control of burst proportion and frequency range by drive-dependent modulation of adaptation

Jeanette Hellgren Kotaleski, Jesper Tegnér, Sten Grillner, Anders Lansner

Journal:

Neurocomputing

Année:

1999

Langue:

english

Fichier:

PDF, 301 KB

english, 1999

On reliable discovery of molecular signatures

Roland Nilsson, Johan Björkegren, Jesper Tegnér

Journal:

BMC Bioinformatics

Année:

2009

Langue:

english

Fichier:

PDF, 706 KB

english, 2009

Detection of compound mode of action by computational integration of whole-genome measurements and genetic perturbations

Kristofer Hallén, Johan Björkegren, Jesper Tegnér

Journal:

BMC Bioinformatics

Année:

2006

Langue:

english

Fichier:

PDF, 392 KB

english, 2006

Detecting multivariate differentially expressed genes

Roland Nilsson, José M Peña, Johan Björkegren, Jesper Tegnér

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 483 KB

english, 2007

Computational disease modeling – fact or fiction?

Jesper N Tegnér, Albert Compte, Charles Auffray, Gary An, Gunnar Cedersund, Gilles Clermont, Boris Gutkin, Zoltán N Oltvai, Klaas Enno Stephan, Randy Thomas, Pablo Villoslada

Journal:

BMC Systems Biology

Année:

2009

Langue:

english

Fichier:

PDF, 179 KB

english, 2009

Integrated approaches to uncovering transcription regulatory networks in mammalian cells

Kai Tan, Jesper Tegner, Timothy Ravasi

Journal:

Genomics

Année:

2008

Langue:

english

Fichier:

PDF, 798 KB

english, 2008

Intrinsic function of a neuronal network — a vertebrate central pattern generator

Sten Grillner, Örjan Ekeberg, Abdeljabbar El Manira, Anders Lansner, David Parker, Jesper Tegnér, Peter Wallén

Journal:

Brain Research Reviews

Année:

1998

Langue:

english

Fichier:

PDF, 964 KB

english, 1998

Pediatric systems medicine: evaluating needs and opportunities using congenital heart block as a case study

Tegnér, Jesper, Abugessaisa, Imad

Journal:

Pediatric Research

Année:

2013

Langue:

english

Fichier:

PDF, 500 KB

english, 2013

Identification of novel markers in rheumatoid arthritis through integrated analysis of DNA methylation and microRNA expression

de la Rica, Lorenzo, Urquiza, José M., Gómez-Cabrero, David, Islam, Abul B.M.M.K., López-Bigas, Nuria, Tegnér, Jesper, Toes, René E.M., Ballestar, Esteban

Journal:

Journal of Autoimmunity

Année:

2013

Langue:

english

Fichier:

PDF, 1.28 MB

english, 2013

Data integration in the era of omics: current and future challenges

Gomez-Cabrero, David, Abugessaisa, Imad, Maier, Dieter, Teschendorff, Andrew, Merkenschlager, Matthias, Gisel, Andreas, Ballestar, Esteban, Bongcam-Rudloff, Erik, Conesa, Ana, Tegnér, Jesper

Journal:

BMC Systems Biology

Année:

2014

Langue:

english

Fichier:

PDF, 911 KB

english, 2014

STATegra EMS: an Experiment Management System for complex next-generation omics experiments

Hernández-de-Diego, Rafael, Boix-Chova, Noemi, Gómez-Cabrero, David, Tegner, Jesper, Abugessaisa, Imad, Conesa, Ana

Journal:

BMC Systems Biology

Année:

2014

Langue:

english

Fichier:

PDF, 1.21 MB

english, 2014

Methylome characterization of CD4+ T cells in multiple sclerosis — Establishing a role for miR-21 in autoimmune disease

Ruhrmann, Sabrina, Piket, Eliane, Bergman, Petra, Kular, Lara, Lorenzi, Julio Cesar Cetrulo, Aeinehband, Shahin, Parsa, Roham, Gomez-cabrero, David, Tegnér, Jesper, Piehl, Fredrik, Jagodic, Maja

Journal:

Journal of Neuroimmunology

Année:

2014

Langue:

english

Fichier:

PDF, 52 KB

english, 2014

[IEEE 2013 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Shanghai, China (2013.12.18-2013.12.21)] 2013 IEEE International Conference on Bioinformatics and Biomedicine - Algorithmic complexity of motifs clusters superfamilies of networks

Zenil, Hector, Kiani, Narsis A., Tegner, Jesper

Année:

2013

Langue:

english

Fichier:

PDF, 219 KB

english, 2013

An integrative analysis reveals coordinated reprogramming of the epigenome and the transcriptome in human skeletal muscle after training

Lindholm, Maléne E, Marabita, Francesco, Gomez-Cabrero, David, Rundqvist, Helene, Ekström, Tomas J, Tegnér, Jesper, Sundberg, Carl Johan

Journal:

Epigenetics

Année:

2014

Langue:

english

Fichier:

PDF, 945 KB

english, 2014

An evaluation of analysis pipelines for DNA methylation profiling using the Illumina HumanMethylation450 BeadChip platform

Marabita, Francesco, Almgren, Malin, Lindholm, Maléne E., Ruhrmann, Sabrina, Fagerström-Billai, Fredrik, Jagodic, Maja, Sundberg, Carl J., Ekström, Tomas J., Teschendorff, Andrew E., Tegnér, Jesper, G

Journal:

Epigenetics

Année:

2013

Langue:

english

Fichier:

PDF, 7.12 MB

english, 2013

Stronger Synaptic Connectivity as a Mechanism behind Development of Working Memory-related Brain Activity during Childhood

Edin, Fredrik, Macoveanu, Julian, Olesen, Pernille, Tegnér, Jesper, Klingberg, Torkel

Journal:

Journal of Cognitive Neuroscience

Année:

2007

Langue:

english

Fichier:

PDF, 340 KB

english, 2007

VEGF-B promotes cancer metastasis through a VEGF-A–independent mechanism and serves as a marker of poor prognosis for cancer patients

Yang, Xiaojuan, Zhang, Yin, Hosaka, Kayoko, Andersson, Patrik, Wang, Jian, Tholander, Fredrik, Cao, Ziquan, Morikawa, Hiromasa, Tegnér, Jesper, Yang, Yunlong, Iwamoto, Hideki, Lim, Sharon, Cao, Yihai

Journal:

Proceedings of the National Academy of Sciences

Année:

2015

Langue:

english

Fichier:

PDF, 3.13 MB

english, 2015

FRONTO-PARIETAL CONNECTION ASYMMETRY REGULATES WORKING MEMORY DISTRACTIBILITY

EDIN, FREDRIK, KLINGBERG, TORKEL, STÖDBERG, TOMMY, TEGNÉR, JESPER

Journal:

Journal of Integrative Neuroscience

Année:

2007

Langue:

english

Fichier:

PDF, 508 KB

english, 2007

Laboratory biomarkers and frailty: presentation of the FRAILOMIC initiative

Lippi, Giuseppe, Jansen-Duerr, Pidder, Viña, Jose, Durrance-Bagale, Anna, Abugessaisa, Imad, Gomez-Cabrero, David, Tegnér, Jesper, Grillari, Johannes, Erusalimsky, Jorge, Sinclair, Alan, Rodriguez-Man

Journal:

Clinical Chemistry and Laboratory Medicine

Année:

2015

Langue:

english

Fichier:

PDF, 116 KB

english, 2015

Transcriptional Profiling Uncovers a Network of Cholesterol-Responsive Atherosclerosis Target Genes

Skogsberg, Josefin, Lundström, Jesper, Kovacs, Alexander, Nilsson, Roland, Noori, Peri, Maleki, Shohreh, Köhler, Marina, Hamsten, Anders, Tegnér, Jesper, Björkegren, Johan, Frankel, Wayne N.

Journal:

PLoS Genetics

Année:

2008

Langue:

english

Fichier:

PDF, 566 KB

english, 2008

Electrotonic Signals along Intracellular Membranes May Interconnect Dendritic Spines and Nucleus

Shemer, Isaac, Brinne, Björn, Tegnér, Jesper, Grillner, Sten, Friston, Karl J.

Journal:

PLoS Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 916 KB

english, 2008

Normalization of circulating microRNA expression data obtained by quantitative real-time RT-PCR

Marabita, Francesco, de Candia, Paola, Torri, Anna, Tegnér, Jesper, Abrignani, Sergio, Rossi, Riccardo L.

Journal:

Briefings in Bioinformatics

Année:

2015

Langue:

english

Fichier:

PDF, 793 KB

english, 2015

Monozygotic twins discordant for common variable immunodeficiency reveal impaired DNA demethylation during naïve-to-memory B-cell transition

Rodríguez-Cortez, Virginia C., del Pino-Molina, Lucia, Rodríguez-Ubreva, Javier, Ciudad, Laura, Gómez-Cabrero, David, Company, Carlos, Urquiza, José M., Tegnér, Jesper, Rodríguez-Gallego, Carlos, Lópe

Journal:

Nature Communications

Année:

2015

Langue:

english

Fichier:

PDF, 702 KB

english, 2015

Methods of Information Theory and Algorithmic Complexity for Network Biology

Zenil, Hector, Kiani, Narsis A., Tegnér, Jesper

Journal:

Seminars in Cell & Developmental Biology

Année:

2016

Langue:

english

Fichier:

PDF, 1.34 MB

english, 2016

[IEEE 2015 11th International Conference on Signal-Image Technology & Internet-Based Systems (SITIS) - Bangkok, Thailand (2015.11.23-2015.11.27)] 2015 11th International Conference on Signal-Image Technology & Internet-Based Systems (SITIS) - Topological Evaluation of Methods for Reconstruction of Genetic Regulatory Networks

Olczak, Jakub, Kiani, Narsis A., Zenil, Hector, Tegner, Jesper

Année:

2015

Langue:

english

Fichier:

PDF, 478 KB

english, 2015

Human macrophages induce CD4+Foxp3+ regulatory T cells via binding and re-release of TGF-β

Schmidt, Angelika, Zhang, Xing-Mei, Joshi, Rubin N, Iqbal, Shasina, Wahlund, Casper, Gabrielsson, Susanne, Harris, Robert A, Tegnér, Jesper

Journal:

Immunology & Cell Biology

Année:

2016

Langue:

english

Fichier:

PDF, 3.22 MB

english, 2016

IL-1β promotes Th17 differentiation by inducing alternative splicing of FOXP3

Mailer, Reiner K. W., Joly, Anne-Laure, Liu, Sang, Elias, Szabolcs, Tegner, Jesper, Andersson, John

Journal:

Scientific Reports

Année:

2015

Langue:

english

Fichier:

PDF, 1.13 MB

english, 2015